IL_5APO_076
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5APO_076 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.0951
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|A|1883||||P_1
5APO|1|5|A|1884||||P_1
5APO|1|5|U|1885||||P_1
5APO|1|5|A|1886||||P_1
5APO|1|5|A|1887||||P_1
5APO|1|5|U|1888||||P_1
5APO|1|5|G|1889||||P_1
*
5APO|1|5|C|2346||||P_1
5APO|1|5|U|2347||||P_1
5APO|1|5|A|2348||||P_1
5APO|1|5|U|2349||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L17-A
- Chain d
- 60S ribosomal protein L31-A
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