IL_5BR8_050

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5BR8|1|A|U|1257, 5BR8|1|A|U|1278, 5BR8|1|A|A|1280, 5BR8|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5BR8_050 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.1589

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5BR8|1|A|G|1255
5BR8|1|A|A|1256
5BR8|1|A|U|1257
5BR8|1|A|G|1258
*
5BR8|1|A|C|1277
5BR8|1|A|U|1278
5BR8|1|A|A|1279
5BR8|1|A|A|1280
5BR8|1|A|U|1281
5BR8|1|A|C|1282

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z