IL_5D8B_006

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_006 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2726

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5D8B|1|AD|U|80
5D8B|1|AD|G|81
5D8B|1|AD|G|82
*
5D8B|1|AD|C|94
5D8B|1|AD|U|95
5D8B|1|AD|G|96

Current chains

Chain AD

5S ribosomal RNA

Nearby chains

Chain GB

50S ribosomal protein L16

Chain PB

50S ribosomal protein L25

Chain TB

50S ribosomal protein L30

Chain ZC

Large subunit ribosomal RNA; LSU rRNA