IL_5D8B_030

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_030 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.136

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

5D8B|1|UC|C|569
5D8B|1|UC|G|570
5D8B|1|UC|U|571
5D8B|1|UC|A|572
5D8B|1|UC|A|573
5D8B|1|UC|A|574
5D8B|1|UC|G|575
*
5D8B|1|UC|C|880
5D8B|1|UC|G|881

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S12

Chain RA

30S ribosomal protein S17