IL_5D8B_039

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5D8B|1|UC|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_039 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1131

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5D8B|1|UC|G|683
5D8B|1|UC|A|684
5D8B|1|UC|G|685
5D8B|1|UC|U|686
5D8B|1|UC|A|687
5D8B|1|UC|G|688
*
5D8B|1|UC|C|699
5D8B|1|UC|G|700
5D8B|1|UC|C|701
5D8B|1|UC|A|702
5D8B|1|UC|G|703
5D8B|1|UC|A|704
5D8B|1|UC|U|705
5D8B|1|UC|A|706
5D8B|1|UC|C|707

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain LA

30S ribosomal protein S11

Chain VC

Large subunit ribosomal RNA; LSU rRNA