IL_5D8B_049

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAG*CUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUAG,CUAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_049 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2172

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5D8B|1|UC|C|998|||B
5D8B|1|UC|U|999
5D8B|1|UC|A|1000
5D8B|1|UC|G|1001
*
5D8B|1|UC|C|1039
5D8B|1|UC|U|1040
5D8B|1|UC|A|1041
5D8B|1|UC|G|1042

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain ZC

Large subunit ribosomal RNA; LSU rRNA