IL_5D8B_052

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

5D8B|1|UC|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_052 not in the Motif Atlas

Geometric match to IL_5J7L_362

Geometric discrepancy: 0.2363

The information below is about IL_5J7L_362

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49612.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5D8B|1|UC|C|1051
5D8B|1|UC|U|1052
5D8B|1|UC|G|1053
5D8B|1|UC|C|1054
5D8B|1|UC|A|1055
5D8B|1|UC|U|1056
*
5D8B|1|UC|A|1204
5D8B|1|UC|U|1205
5D8B|1|UC|G|1206
5D8B|1|UC|G|1207

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain DA

30S ribosomal protein S3

Chain OA

30S ribosomal protein S14