IL_5D8B_053

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

5D8B|1|UC|C|1200, 5D8B|1|UC|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_053 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1295

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5D8B|1|UC|G|1057
5D8B|1|UC|G|1058
*
5D8B|1|UC|U|1199
5D8B|1|UC|C|1200
5D8B|1|UC|A|1201
5D8B|1|UC|G|1202
5D8B|1|UC|C|1203

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain DA

30S ribosomal protein S3

Chain KA

30S ribosomal protein S10

Chain OA

30S ribosomal protein S14