IL_5D8B_062

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_062 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1589

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5D8B|1|UC|C|1303
5D8B|1|UC|G|1304
5D8B|1|UC|G|1305
5D8B|1|UC|A|1306
5D8B|1|UC|U|1307
5D8B|1|UC|U|1308
*
5D8B|1|UC|A|1329
5D8B|1|UC|U|1330
5D8B|1|UC|G|1331
5D8B|1|UC|A|1332
5D8B|1|UC|A|1333
5D8B|1|UC|G|1334

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain NA

30S ribosomal protein S13

Chain VA

30S ribosomal protein Thx