IL_5D8B_067

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_067 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3056

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

5D8B|1|UC|C|1407
5D8B|1|UC|A|1408
5D8B|1|UC|C|1409
*
5D8B|1|UC|G|1491
5D8B|1|UC|A|1492
5D8B|1|UC|A|1493
5D8B|1|UC|G|1494

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain GD

mRNA

Chain MA

30S ribosomal protein S12

Chain VC

Large subunit ribosomal RNA; LSU rRNA