IL_5D8B_088

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

5D8B|1|VC|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_088 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3843

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5D8B|1|VC|C|280
5D8B|1|VC|G|281
5D8B|1|VC|A|282
5D8B|1|VC|A|283
5D8B|1|VC|U|284
5D8B|1|VC|C|285
*
5D8B|1|VC|G|356
5D8B|1|VC|A|357
5D8B|1|VC|U|358
5D8B|1|VC|A|359
5D8B|1|VC|G|360

Current chains

Chain VC

23S ribosomal RNA

Nearby chains