IL_5D8B_094

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_094 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0807

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5D8B|1|VC|U|606
5D8B|1|VC|U|607
5D8B|1|VC|A|608
5D8B|1|VC|A|609|||A
5D8B|1|VC|G|609|||B
*
5D8B|1|VC|C|618|||B
5D8B|1|VC|G|619
5D8B|1|VC|G|620
5D8B|1|VC|A|621
5D8B|1|VC|G|622

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15