IL_5D8B_148

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

5D8B|1|VC|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_148 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.1341

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5D8B|1|VC|G|1846
5D8B|1|VC|A|1847
5D8B|1|VC|A|1848
5D8B|1|VC|G|1849
*
5D8B|1|VC|C|1893
5D8B|1|VC|C|1894

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain UC

Small subunit ribosomal RNA; SSU rRNA

Chain XC

Transfer RNA; tRNA