IL_5D8B_153

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5D8B|1|VC|A|1938, 5D8B|1|VC|U|1944, 5D8B|1|VC|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_153 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1278

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5D8B|1|VC|C|1934
5D8B|1|VC|G|1935
5D8B|1|VC|A|1936
5D8B|1|VC|A|1937
5D8B|1|VC|A|1938
5D8B|1|VC|U|1939
5D8B|1|VC|U|1940
5D8B|1|VC|C|1941
5D8B|1|VC|C|1942
5D8B|1|VC|U|1943
5D8B|1|VC|U|1944
5D8B|1|VC|G|1945
*
5D8B|1|VC|C|1961
5D8B|1|VC|C|1962
5D8B|1|VC|U|1963
5D8B|1|VC|G|1964

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain UC

Small subunit ribosomal RNA; SSU rRNA