IL_5D8B_157

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

5D8B|1|VC|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_157 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0887

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|C|2081
5D8B|1|VC|A|2082
5D8B|1|VC|G|2083
*
5D8B|1|VC|C|2236
5D8B|1|VC|G|2237
5D8B|1|VC|G|2238
5D8B|1|VC|G|2239

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain V

50S ribosomal protein L28