IL_5D8B_189

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_189 not in the Motif Atlas

Homologous match to IL_8P9A_366

Geometric discrepancy: 0.5662

The information below is about IL_8P9A_366

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

5D8B|1|WC|C|30
5D8B|1|WC|C|31
*
5D8B|1|WC|G|51
5D8B|1|WC|A|52
5D8B|1|WC|A|53
5D8B|1|WC|G|54

Current chains

Chain WC

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18