IL_5D8B_190

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UUCCC*GAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_190 not in the Motif Atlas

Geometric match to IL_7RQB_114

Geometric discrepancy: 0.1174

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

5D8B|1|WC|U|34
5D8B|1|WC|U|35
5D8B|1|WC|C|36
5D8B|1|WC|C|37
5D8B|1|WC|C|38
*
5D8B|1|WC|G|44
5D8B|1|WC|A|45
5D8B|1|WC|A|46
5D8B|1|WC|C|47
5D8B|1|WC|A|48

Current chains

Chain WC

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain M

50S ribosomal protein L18

Chain VC

Large subunit ribosomal RNA; LSU rRNA