IL_5D8B_201

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_201 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2419

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5D8B|1|YC|C|136
5D8B|1|YC|C|136|||A
5D8B|1|YC|C|136|||B
5D8B|1|YC|C|137
*
5D8B|1|YC|G|226
5D8B|1|YC|G|227

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain JC

30S ribosomal protein S13

Chain MC

30S ribosomal protein S16

Chain RC

30S ribosomal protein Thx