IL_5D8B_213

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_213 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1081

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5D8B|1|YC|G|450
5D8B|1|YC|A|451
5D8B|1|YC|A|452
5D8B|1|YC|A|453
5D8B|1|YC|C|454
5D8B|1|YC|C|455
*
5D8B|1|YC|G|477
5D8B|1|YC|A|478
5D8B|1|YC|C|479
5D8B|1|YC|U|480
5D8B|1|YC|G|481
5D8B|1|YC|A|482
5D8B|1|YC|C|483

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain MC

30S ribosomal protein S16