IL_5D8B_223

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5D8B|1|YC|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_223 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1253

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5D8B|1|YC|G|662
5D8B|1|YC|A|663
5D8B|1|YC|G|664
5D8B|1|YC|A|665
5D8B|1|YC|G|666
*
5D8B|1|YC|U|740
5D8B|1|YC|G|741
5D8B|1|YC|G|742
5D8B|1|YC|U|743

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S6

Chain LC

30S ribosomal protein S15

Chain OC

30S ribosomal protein S18