IL_5D8B_224
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5D8B_224 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.1026
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5D8B|1|YC|G|673
5D8B|1|YC|G|674
5D8B|1|YC|A|675
5D8B|1|YC|A|676
5D8B|1|YC|U|677
5D8B|1|YC|U|678
*
5D8B|1|YC|A|712
5D8B|1|YC|G|713
5D8B|1|YC|G|714
5D8B|1|YC|A|715
5D8B|1|YC|A|716
5D8B|1|YC|C|717
Current chains
- Chain YC
- 16S ribosomal RNA
Nearby chains
- Chain CC
- 30S ribosomal protein S6
- Chain HC
- 30S ribosomal protein S11
- Chain OC
- 30S ribosomal protein S18
- Chain WA
- 50S ribosomal protein L2
Coloring options: