IL_5D8B_226

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_226 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1019

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5D8B|1|YC|G|774
5D8B|1|YC|G|775
5D8B|1|YC|G|776
5D8B|1|YC|A|777
5D8B|1|YC|G|778
*
5D8B|1|YC|U|804
5D8B|1|YC|C|805

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain HC

30S ribosomal protein S11

Chain WA

50S ribosomal protein L2

Chain ZC

Large subunit ribosomal RNA; LSU rRNA