IL_5D8B_229

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_229 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0847

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5D8B|1|YC|G|887
5D8B|1|YC|G|888
5D8B|1|YC|A|889
5D8B|1|YC|G|890
5D8B|1|YC|U|891
5D8B|1|YC|A|892
5D8B|1|YC|C|893
5D8B|1|YC|G|894
*
5D8B|1|YC|U|905
5D8B|1|YC|G|906
5D8B|1|YC|A|907
5D8B|1|YC|A|908
5D8B|1|YC|A|909
5D8B|1|YC|C|910

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain IC

30S ribosomal protein S12