IL_5D8B_230

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

5D8B|1|YC|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_230 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3095

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5D8B|1|YC|U|921
5D8B|1|YC|G|922
5D8B|1|YC|A|923
*
5D8B|1|YC|U|1393
5D8B|1|YC|A|1394
5D8B|1|YC|C|1395
5D8B|1|YC|A|1396

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S5