IL_5D8B_240

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

5D8B|1|YC|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_240 not in the Motif Atlas

Homologous match to IL_4LFB_046

Geometric discrepancy: 0.1611

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

5D8B|1|YC|C|1060
5D8B|1|YC|G|1061
*
5D8B|1|YC|C|1195
5D8B|1|YC|U|1196
5D8B|1|YC|G|1197

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S5

Chain FC

30S ribosomal protein S9

Chain GC

30S ribosomal protein S10

Chain KC

30S ribosomal protein S14

Chain ZB

30S ribosomal protein S3