IL_5D8B_241

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_241 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1488

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5D8B|1|YC|G|1061
5D8B|1|YC|U|1062
5D8B|1|YC|C|1063
*
5D8B|1|YC|G|1193
5D8B|1|YC|U|1194
5D8B|1|YC|C|1195

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S5

Chain FC

30S ribosomal protein S9

Chain GC

30S ribosomal protein S10

Chain KC

30S ribosomal protein S14

Chain ZB

30S ribosomal protein S3