IL_5D8B_251

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_251 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1311

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5D8B|1|YC|G|1401
5D8B|1|YC|C|1402
5D8B|1|YC|C|1403
5D8B|1|YC|C|1404
*
5D8B|1|YC|G|1497
5D8B|1|YC|U|1498
5D8B|1|YC|A|1499
5D8B|1|YC|A|1500
5D8B|1|YC|C|1501

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain FD

Transfer RNA; tRNA

Chain HD

mRNA

Chain ZC

Large subunit ribosomal RNA; LSU rRNA