IL_5D8B_279

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5D8B|1|ZC|U|504, 5D8B|1|ZC|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_279 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1034

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5D8B|1|ZC|G|481
5D8B|1|ZC|A|482
5D8B|1|ZC|A|483
5D8B|1|ZC|C|484
*
5D8B|1|ZC|G|496
5D8B|1|ZC|A|497
5D8B|1|ZC|G|498
5D8B|1|ZC|U|499
5D8B|1|ZC|G|500
5D8B|1|ZC|A|501
5D8B|1|ZC|A|502
5D8B|1|ZC|A|503
5D8B|1|ZC|U|504
5D8B|1|ZC|A|505
5D8B|1|ZC|G|506
5D8B|1|ZC|A|507
5D8B|1|ZC|G|508
5D8B|1|ZC|C|509

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain MB

50S ribosomal protein L22

Chain OB

50S ribosomal protein L24