IL_5D8B_280

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_280 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.11

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5D8B|1|ZC|C|564
5D8B|1|ZC|C|565
5D8B|1|ZC|U|566
*
5D8B|1|ZC|A|575
5D8B|1|ZC|U|576
5D8B|1|ZC|G|577

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain KB

50S ribosomal protein L20

Chain LB

50S ribosomal protein L21

Chain UB

50S ribosomal protein L32

Chain YA

50S ribosomal protein L4