IL_5D8B_289

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_289 not in the Motif Atlas

Homologous match to IL_7RQB_024

Geometric discrepancy: 0.0952

The information below is about IL_7RQB_024

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_92001.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

5D8B|1|ZC|C|837
5D8B|1|ZC|C|838
*
5D8B|1|ZC|G|940
5D8B|1|ZC|A|941
5D8B|1|ZC|G|942

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain XB

50S ribosomal protein L35