IL_5D8B_301

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_301 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.1504

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5D8B|1|ZC|C|1004
5D8B|1|ZC|C|1005
5D8B|1|ZC|C|1006
5D8B|1|ZC|C|1007
5D8B|1|ZC|C|1008
5D8B|1|ZC|A|1009
5D8B|1|ZC|A|1010
5D8B|1|ZC|G|1011
*
5D8B|1|ZC|C|1150
5D8B|1|ZC|G|1151

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain DB

50S ribosomal protein L13

Chain KB

50S ribosomal protein L20