IL_5D8B_306

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5D8B|1|ZC|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_306 not in the Motif Atlas

Geometric match to IL_5J7L_284

Geometric discrepancy: 0.1654

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5D8B|1|ZC|C|1043
5D8B|1|ZC|G|1044
5D8B|1|ZC|A|1045
5D8B|1|ZC|A|1046
5D8B|1|ZC|G|1047
5D8B|1|ZC|A|1048
5D8B|1|ZC|C|1049
5D8B|1|ZC|A|1050
5D8B|1|ZC|G|1051
*
5D8B|1|ZC|U|1108
5D8B|1|ZC|C|1109
5D8B|1|ZC|G|1110
5D8B|1|ZC|A|1111
5D8B|1|ZC|G|1112

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L6