IL_5D8B_312

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5D8B|1|ZC|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_312 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1455

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5D8B|1|ZC|C|1208
5D8B|1|ZC|G|1209
5D8B|1|ZC|A|1210
5D8B|1|ZC|U|1211
5D8B|1|ZC|G|1212
5D8B|1|ZC|A|1213
5D8B|1|ZC|A|1214
5D8B|1|ZC|G|1215
*
5D8B|1|ZC|U|1234
5D8B|1|ZC|G|1235
5D8B|1|ZC|G|1236
5D8B|1|ZC|A|1237
5D8B|1|ZC|G|1238

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L20