IL_5D8B_316

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_316 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1631

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5D8B|1|ZC|G|1319
5D8B|1|ZC|C|1320
5D8B|1|ZC|A|1321
5D8B|1|ZC|A|1322
5D8B|1|ZC|U|1323
*
5D8B|1|ZC|A|1331
5D8B|1|ZC|G|1332
5D8B|1|ZC|C|1333

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L17

Chain MB

50S ribosomal protein L22

Chain NB

50S ribosomal protein L23