IL_5D8B_317

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5D8B|1|ZC|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_317 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1098

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5D8B|1|ZC|C|1351
5D8B|1|ZC|U|1352
5D8B|1|ZC|A|1353
5D8B|1|ZC|A|1354
5D8B|1|ZC|G|1355
*
5D8B|1|ZC|C|1376
5D8B|1|ZC|G|1377
5D8B|1|ZC|A|1378
5D8B|1|ZC|A|1379
5D8B|1|ZC|G|1380

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain WA

50S ribosomal protein L2

Chain WB

50S ribosomal protein L34