IL_5D8B_324

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UG*CAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_324 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5326

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5D8B|1|ZC|U|1481
5D8B|1|ZC|G|1483
*
5D8B|1|ZC|C|1506
5D8B|1|ZC|A|1508
5D8B|1|ZC|A|1509
5D8B|1|ZC|A|1510
5D8B|1|ZC|A|1511
5D8B|1|ZC|G|1512

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains