IL_5D8B_328

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_328 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.0701

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

5D8B|1|ZC|G|1666
5D8B|1|ZC|G|1667
5D8B|1|ZC|A|1668
5D8B|1|ZC|A|1669
*
5D8B|1|ZC|U|1993
5D8B|1|ZC|C|1994

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain EB

50S ribosomal protein L14

Chain XA

50S ribosomal protein L3