IL_5D8B_349

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_349 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3444

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5D8B|1|ZC|G|2124
5D8B|1|ZC|G|2125
5D8B|1|ZC|A|2126
5D8B|1|ZC|G|2127
*
5D8B|1|ZC|C|2161
5D8B|1|ZC|G|2162
5D8B|1|ZC|C|2163
5D8B|1|ZC|C|2164
5D8B|1|ZC|G|2165
5D8B|1|ZC|G|2166
5D8B|1|ZC|U|2167
5D8B|1|ZC|G|2168
5D8B|1|ZC|A|2169
5D8B|1|ZC|A|2170
5D8B|1|ZC|A|2171
5D8B|1|ZC|U|2172
5D8B|1|ZC|A|2173
5D8B|1|ZC|C|2174

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain BD

Transfer RNA; tRNA

Chain UC

Small subunit ribosomal RNA; SSU rRNA