IL_5D8B_351

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_351 not in the Motif Atlas

Homologous match to IL_7RQB_088

Geometric discrepancy: 0.184

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5D8B|1|ZC|C|2297
5D8B|1|ZC|A|2298
5D8B|1|ZC|G|2299
*
5D8B|1|ZC|C|2317
5D8B|1|ZC|G|2318
5D8B|1|ZC|G|2319
5D8B|1|ZC|A|2320
5D8B|1|ZC|G|2321

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain AD

5S ribosomal RNA; 5S rRNA

Chain IB

50S ribosomal protein L18

Chain ZA

50S ribosomal protein L5