IL_5D8B_368

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5D8B|1|ZC|U|2689, 5D8B|1|ZC|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_368 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1184

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5D8B|1|ZC|U|2687
5D8B|1|ZC|U|2688
5D8B|1|ZC|U|2689
5D8B|1|ZC|C|2690
5D8B|1|ZC|C|2691
*
5D8B|1|ZC|G|2718
5D8B|1|ZC|G|2719
5D8B|1|ZC|U|2720
5D8B|1|ZC|A|2721
5D8B|1|ZC|G|2722

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L17

Chain JB

50S ribosomal protein L19

Chain XA

50S ribosomal protein L3