IL_5D8B_381

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGCG*CGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_381 not in the Motif Atlas

Homologous match to IL_6CZR_136

Geometric discrepancy: 0.1472

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5D8B|1|UC|G|594
5D8B|1|UC|G|595
5D8B|1|UC|C|596
5D8B|1|UC|G|597
*
5D8B|1|UC|C|643
5D8B|1|UC|G|644
5D8B|1|UC|C|645

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain IA

30S ribosomal protein S8

Chain RA

30S ribosomal protein S17