IL_5D8B_386

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_386 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.3305

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5D8B|1|VC|G|273|||A
5D8B|1|VC|G|273|||B
5D8B|1|VC|C|273|||C
*
5D8B|1|VC|G|363|||E
5D8B|1|VC|U|363|||F
5D8B|1|VC|A|363|||G
5D8B|1|VC|C|364

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9