IL_5D8B_392

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5D8B|1|VC|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_392 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.3855

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5D8B|1|VC|G|1526
5D8B|1|VC|G|1527
5D8B|1|VC|A|1528
5D8B|1|VC|A|1529
5D8B|1|VC|G|1530
*
5D8B|1|VC|U|1541
5D8B|1|VC|G|1542
5D8B|1|VC|A|1543
5D8B|1|VC|C|1544
5D8B|1|VC|A|1545
5D8B|1|VC|A|1546
5D8B|1|VC|C|154|||B

Current chains

Chain VC

23S ribosomal RNA

Nearby chains