IL_5D8B_399

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGACAAC*GCUAAUCC

Length

15 nucleotides

Bulged bases

5D8B|1|YC|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_399 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2403

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5D8B|1|YC|G|147
5D8B|1|YC|G|148
5D8B|1|YC|A|149
5D8B|1|YC|C|150
5D8B|1|YC|A|151
5D8B|1|YC|A|152
5D8B|1|YC|C|153
*
5D8B|1|YC|G|168
5D8B|1|YC|C|169
5D8B|1|YC|U|170
5D8B|1|YC|A|171
5D8B|1|YC|A|172
5D8B|1|YC|U|173
5D8B|1|YC|C|174
5D8B|1|YC|C|175

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S20