3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GUCAAC*GGAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_062 not in the Motif Atlas
Homologous match to IL_5TBW_062
Geometric discrepancy: 0.0542
The information below is about IL_5TBW_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_51005.1
Basepair signature
cWW-L-R-tWH-cWW-L-L
Number of instances in this motif group
2

Unit IDs

5DAT|1|1|G|1500
5DAT|1|1|U|1501
5DAT|1|1|C|1502
5DAT|1|1|A|1503
5DAT|1|1|A|1504
5DAT|1|1|C|1505
*
5DAT|1|1|G|1513
5DAT|1|1|G|1514
5DAT|1|1|A|1515
5DAT|1|1|C|1516

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M7
60S ribosomal protein L17-A
Chain M9
60S ribosomal protein L19-A
Chain O9
60S ribosomal protein L39

Coloring options:


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