IL_5DAT_062
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_062 not in the Motif Atlas
- Homologous match to IL_5TBW_062
- Geometric discrepancy: 0.0542
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5DAT|1|1|G|1500
5DAT|1|1|U|1501
5DAT|1|1|C|1502
5DAT|1|1|A|1503
5DAT|1|1|A|1504
5DAT|1|1|C|1505
*
5DAT|1|1|G|1513
5DAT|1|1|G|1514
5DAT|1|1|A|1515
5DAT|1|1|C|1516
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M7
- 60S ribosomal protein L17-A
- Chain M9
- 60S ribosomal protein L19-A
- Chain O9
- 60S ribosomal protein L39
Coloring options: