IL_5DAT_120

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_120 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3781

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5DAT|1|1|C|3161
5DAT|1|1|C|3162
5DAT|1|1|A|3163
5DAT|1|1|C|3164
5DAT|1|1|A|3165
5DAT|1|1|C|3166
*
5DAT|1|1|G|3284
5DAT|1|1|C|3285
5DAT|1|1|G|3286
5DAT|1|1|U|3287
5DAT|1|1|G|3288
5DAT|1|1|G|3289

Current chains

Chain 1

25S ribosomal RNA

Nearby chains