IL_5DAT_178
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_178 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.1031
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5DAT|1|2|G|885
5DAT|1|2|U|886
5DAT|1|2|A|887
5DAT|1|2|U|888
*
5DAT|1|2|A|924
5DAT|1|2|G|925
5DAT|1|2|A|926
5DAT|1|2|C|927
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain Q3
- 60S ribosomal protein L43-A
- Chain S1
- 40S ribosomal protein S1-A
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