3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
5DAT|1|5|U|534, 5DAT|1|5|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_251 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.0826
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5DAT|1|5|G|531
5DAT|1|5|A|532
5DAT|1|5|A|533
5DAT|1|5|U|534
5DAT|1|5|G|535
5DAT|1|5|U|536
5DAT|1|5|A|537
5DAT|1|5|G|538
*
5DAT|1|5|U|553
5DAT|1|5|A|554
5DAT|1|5|U|555
5DAT|1|5|U|556
5DAT|1|5|A|557
5DAT|1|5|U|558
5DAT|1|5|A|559
5DAT|1|5|G|560
5DAT|1|5|C|561

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain m4
60S ribosomal protein L14-A
Chain n0
60S ribosomal protein L20-A
Chain p0
60S acidic ribosomal protein P0

Coloring options:


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