3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
5DAT|1|5|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_285 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.1904
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

5DAT|1|5|U|1218
5DAT|1|5|C|1219
5DAT|1|5|U|1220
5DAT|1|5|A|1221
5DAT|1|5|G|1222
5DAT|1|5|A|1223
5DAT|1|5|C|1224
5DAT|1|5|A|1225
5DAT|1|5|G|1226
*
5DAT|1|5|C|1283
5DAT|1|5|C|1284
5DAT|1|5|G|1285
5DAT|1|5|A|1286
5DAT|1|5|A|1287

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain n0
60S ribosomal protein L20-A
Chain p0
60S acidic ribosomal protein P0

Coloring options:


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