IL_5DAT_413
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5DAT|1|6|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_413 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.0501
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5DAT|1|6|C|874
5DAT|1|6|G|875
5DAT|1|6|G|876
5DAT|1|6|G|877
5DAT|1|6|G|878
*
5DAT|1|6|C|950
5DAT|1|6|A|951
5DAT|1|6|A|952
5DAT|1|6|G|953
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain d6
- 40S ribosomal protein S26-B
- Chain o0
- 60S ribosomal protein L30
- Chain s1
- 40S ribosomal protein S1-A
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